Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
THYM | rs4728784 | chr7:76135821 | C/T | 2.35E-5 | 113 | 39.5 | 46.23 | 25.83 | KM Plot |
THYM | rs4728785 | chr7:76135921 | G/A | 2.35E-5 | 113 | 39.5 | 46.23 | 25.83 | KM Plot |
THYM | rs4728786 | chr7:76135948 | A/G | 2.35E-5 | 113 | 39.5 | 46.23 | 25.83 | KM Plot |
THYM | rs4728788 | chr7:76136719 | A/G | 2.35E-5 | 113 | 39.5 | 46.23 | 25.83 | KM Plot |
THYM | rs55762838 | chr19:50727179 | A/G | 6.45E-8 | 110 | 39.75 | 48 | 9.97 | KM Plot |
THYM | rs55929162 | chr19:50726935 | C/T | 6.45E-8 | 110 | 39.75 | 48 | 9.97 | KM Plot |
THYM | rs56014217 | chr2:73623929 | C/T | 6.59E-8 | 109 | 37.63 | 46.6 | 34.83 | KM Plot |
THYM | rs56354891 | chr19:50727510 | T/C | 6.45E-8 | 110 | 39.75 | 48 | 9.97 | KM Plot |
THYM | rs5765272 | chr22:45747901 | C/T | 4.59E-5 | 113 | 38.33 | 50.07 | 32.7 | KM Plot |
THYM | rs5892772 | chr8:82692339 | T/TA | 8.13E-5 | 110 | 41.77 | 35.77 | 22.5 | KM Plot |
THYM | rs6006992 | chr22:45742760 | C/T | 1.04E-5 | 113 | 38.83 | 42.9 | 41.77 | KM Plot |
THYM | rs60417777 | chr2:32964068 | G/A | 8.22E-13 | 113 | 48 | 26.57 | 0.9 | KM Plot |
THYM | rs62231146 | chr22:45807538 | G/C | 5.38E-5 | 112 | 38.58 | 50.07 | 41.77 | KM Plot |
THYM | rs62514350 | chr8:82746817 | G/A | 4.45E-5 | 113 | 42.82 | 35.77 | 22.5 | KM Plot |
THYM | rs62514357 | chr8:82754997 | T/C | 4.45E-5 | 113 | 42.82 | 35.77 | 22.5 | KM Plot |